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Publications of PA MICRO, 2016-2019

Research Domain FUNCT
FUNCT Functional Plant Biology
Research Domain MICRO
MICRO Plant-Microbe Systems
MICRO.1 Principles of integrated pest management
MICRO.2 Beneficial plant-microbe interactions
Publications of PA MICRO, 2016-2019
Research Domain MICRO
BIOINF Genomics and bioinformatics in horticulture
Research Domain QUALITY
QUALITY Plant Quality and Food Security
Research Domain HORTSYS
HORTSYS Next-Generation Horticultural Systems
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Monographs

2016

Bitterlich, M. 2016. The photosynthetic response of greenhouse tomato cultures under a changing environment and the implications of using arbuscular mycorrhiza. Humboldt-Universität zu Berlin, Lebenswissenschaftliche Fakultät, 195 pp, PhD thesis.

Van, C.B. 2016. Acclimatisation of arbuscular mycorrhizal fungi enhances heavy metal (Zn and Pb) tolerance of the fungi and of the mycorrhizal plant partner. Humboldt-Universität zu Berlin, Lebenswissenschaftliche Fakultät, 123 pp, PhD thesis.

2017

Genzel, F. 2017. The molecular basis of the plant-pathogen interaction of potato and Rhizoctonia solani. Humboldt-Universität zu Berlin, Lebenswissenschaftliche Fakultät, 173 pp, PhD thesis.

2018

Ekandjo, L.K. 2018. The relevance of two nitrogenase isozymes for biological nitrogen fixation in Kosakonia radicincitans pure culture and in Plantae. Humboldt-Universität zu Berlin Lebenswissenschaftliche Fakultät, PhD thesis.

Yakti, W. 2018. Investigating the impact of dark septate endophytes on plant nutrition and analysing their interaction with plant pathogens. Humboldt-Universität zu Berlin, Lebenswissenschaftliche Fakultät, PhD thesis.

 

Individual contributions to edited volumes

2016

Babin, D.; Sommermann, L.; Chowdhury, S.P.; Schmid, M.; Geistlinger, J.; Grosch, R.; Smalla, K. 2016a. Assessing the impact of farming strategies on soil and plant health. Plant 2030 Status Seminar, Book of Abstracts, 86.

Babin, D.; Bosnak, M.; Sandmann, M.; Jacquiod, S. A.; Sørensen, S. J.; Deubel, A.; Geistlinger, J.; Grosch, R.; Smalla, K. 2016b. Agricultural management shapes the bulk and rhizosphere microbiome – Implications for soil health?, 3rd Thünen Symposium on Soil Metagenomics, Book of Abstracts, 188.

Babin, D.; Ibarbalz, F.; Figuerola, E.; Gabbarini, L.; Frene, J. P.; Wall, L.; Erijman, L.; Grosch, R.; Smalla, K. 2016c. Effect of long-term farming strategies on soil and rhizosphere microbial communities. 16th International Symposium on Microbial Ecology (ISME), Book of Abstracts, 1020.

Becker, Y.; Becker, M.; Green, K.; Scott, B. 2016. The endophytic symbiont Epichloё festucae establishes an epiphyllous network on the surface of Lolium perenne leaves by development of an expressorium, an appressorium-like leaf exit structure. 13th European Conference on Fungal Genetics, Book of Abstacts, 172.

Berger, B.; Becker, M.; Becker, Y.; Patz, S.; Drungowski, M.; Baldermann, S.; Ruppel, S. 2016. Crosscommunication of PGPB Kosakonia radicincitans with Solanum lycopersicum. 3rd Doctoral Researcher’s Conference of GRK1798 „Signaling at the Plant-Soil Interface“, Book of Abstracts, 34.

Beutin, L.; Scherwinski, A.-C.; Ruppel, S. 2016. Contamination pathways and detection of human pathogenic Escherichia coli from plant foods. Journal für Kulturpflanzen, 68, 53-62.

Chowdhury, S.P.; Babin, D.; Sandmann, M.; Geistlinger, J.; Grosch, R.; Smalla, K.; Schmid, M. 2016. Impact of agricultural management strategies on the rhizosphere microbial community and plant health. 16th ISME, Book of Abstracts, 1068.

Cruz, M.; Jakobs-Schönwandt, D.; Becker, M.; Berger, B.; Junge, H.; Ruppel, S.; Patel, A. 2016. Entwicklung eines integrierten Fermentations- und Formulierungsverfahrens für das endophytische Bakterium Kosakonia radicincitans als neuartiges Düngemittel. International Organisation for Biological and Integrated Control-West Palaearctic Regional Section (IOBC-WPRS) Bulletin 117, 403-404.

Ekandjo, L.; Becker, Y., Witzel, K.; Patz, S.; Remus, R.; Ruppel, S. 2016a. The role of anfH and nifH in biological nitrogen fixation of the endophytic plant growth-promoting bacterium Kosakonia radicincitans DSM16656T. Plant Biology Europe, EPSO/FESPB Congress Book of Abstracts, 52.

Ekandjo, L.; Becker, Y., Witzel, K.; Patz, S.; Remus, R.; Ruppel, S. 2016b. The role of anfH and nifH on biological nitrogen fixation in the plant growth-promoting bacterium Kosakonia radicincitans DSM16656T. 12th European Nitrogen Fixation Conference, Book of Abstracts, 311.

Ekandjo, L.; Becker, Y., Witzel, K.; Patz, S.; Remus, R.; Ruppel, S. 2016c. Differential expressions of anfH and nifH of Kosakonia radicincitans DSM16656T in nitrogen enriched media. Black forest summer school on NGS data for phylogenetics, Book of Abstracts, 17.

Elsayed, T.; Schreiter, S.; Ding, G.; Grosch, R.; Jacquiod S.J.A.; Sørensen, S.; Smalla, K. 2016. Ecology of bacterial antagonists and their complex interaction with the pathogen and the host plant rhizosphere microbiome. IOBC-WPRS Bulletin 117, 187-188.

Fornefeld, E.; Schierstaedt, J.; Jechalke, S.; Schikora, A.; Grosch, R.; Smalla, K. 2016. Factors influencing the survival of Salmonella in agricultural soil. International Symposium Salmonella and Salmonellosis (I3S), Book of Abstracts.

Grosch, R.; Buhtz, A.; Schwarz, D. 2016a. Verticillium dahliae affect root morphology characteristics of tomato and plant defense response. Proceeding 9th Australasian Soilborne Diseases Symposium, Book of Abstracts, 34.

Grosch, R.; Gräfe, J.; Schellenberg, I.; Geistlinger, J.; Smalla, K.; Pühler, P.; Schlüter, A.; Neumann, G.; Hartmann, A.; Schmid, M.; Moldaschl, M.; Mäder, P. 2016b. Implications of soil management practices on soil suppressiveness for improved soil health and sustainable plant production. Plant 2030 Status Seminar, Book of Abstracts, 23.

Grosch, R.; Genzel, F.; Lindner, K.; Bulich, C. 2016c. Entwicklung einer Resistenzprüfmethode für das Pathosystem Kartoffel/Rhizoctonia solani sowie Entwicklung einer Applikationsstrategie eines pilzlichen Antagonisten zur Reduzierung des bodenbürtigen und knollenbürtigen Inokulums. Innovationstage 2016, Die Zukunft ins Jetzt holen, Book of Abstracts, 137-139.

Gulati, S.; Grosch, R.; Ballhausen, M.B. 2016. Comparison of different inoculum methods for infection with Verticillium dahliae and Fusarium oxysporum. IOBC-WPRS Bulletin 117, 226.

Hegazi, N.; Ruppel, S. 2016. The plant microbiome: An outlook and the new major frontiers. Helwan University First International Conference on Biodiversity and Sustainable Development, Book of Abstracts, 11.

Ruppel, S., Berger, B., Becker, M., Patz, S., Hasan, S., Eichler-Löbermann, B. 2016a. Rhizobacterial impact on plant P acquisition. Phosphorus 2020 – Challenges for Synthesis, Agriculture, and Ecosystems 8th International Phosphorus Workshop, Book of Abstracts, 152.

Ruppel, S.; Berger, B.; Becker, M.; Becker, Y.; Patz S.; Ekandjo, L.; Tchakounté, G.V. 2016b. Kosakonia radicincitans: eine neue Bakterienart mit überraschend hohem Potential zur Steigerung von Pflanzenerträgen. Die Rolle der Bodenmikroorganismen bei der Ernährung von Kulturpflanzen, Internationale wissenschaftliche Tagung an der Hochschule, Book of Abstracts, 25.

Sandmann, M.; Grosch, R.; Gräfe, J. 2016a. Can stomatal conductance of lettuce be evaluated via thermography? Plant 2030 Status Seminar, Book of Abstracts, 103.

Sandmann, M.; Grosch, R.; Gräfe, J. 2016b. How to measure stomatal conductance of lettuce leaves via thermography. International Society for Horticultural Science (ISHS) Symposium 2016 „Sensing Plant Water Status“, Book of Abstracts, 52.

Schierstaedt, J.; Fornefeld, E.; Jechalke, S.; Schikora, A.; Grosch, R.; Smalla, K. 2016a. Persistence of Salmonella in agricultural soil is strongly influenced by its bacterial community. IOBC-WPRS Bulletin 117, 18.

Schierstaedt, J.; Fornefeld, E.; Ott, E.; Jechalke, S.; Grosch, R.; Smalla, K.; Schikora, A. 2016b. Colonization of crop plants by Salmonella enterica – the goals of the plantinfect consortium. Deutsche Pflanzenschutztagung (DPST), Book of Abstracts.

Schreiner, M.; Mewis, I.; Neugart, S.; Zrenner, R.; Glaab, J.; Wiesner, M.; Jansen, M:A:K. 2016. UV-B Elicitation of Secondary Plant Metabolites. In: Kneissl, M.; Rass, J. (Eds.), III-Nitride Ultraviolet Emitter: Technology and Applications, Springer Series in Materials Science Volume 227, Springer, 387-414.

Schreiter, S.; Smalla, K.; Grosch, R. 2016. Plant species and soil type independent rhizosphere competence. IOBC-WPRS Bulletin 117, 185.

Tchuisseu Tchakounté, G.V.; Fankem, H.; Berger, B.; Ruppel, S. 2016a. Maize (Zea mays) growth promotion by rock-phosphate solubilizing bacteria isolated from nutrient deficient soils of Cameroon. 7th European Plant Science Retreat, Book of Abstracts, 54.

Tchuisseu Tchakounté, G.V., Fankem, H.; Ruppel, S. 2016b. Phosphate solubilizing microorganisms as fertility tools for nutrient deficient soils of Cameroon. Phosphorus 2020 – Challenges for Synthesis, Agriculture, and Ecosystems 8th International Phosphorus Workshop, Book of Abstracts, 187.

Verwaaijen, B.; Wibberg, D.; Kröber, M.; Winkler, A.; Bednarz, H.; Niehaus, K.; Grosch, R.; Pühler, A.; Schlüter, A. 2016. The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant Lactuca sativa. IOBC-WPRS Bulletin 117, 321-322.

Witzel, K.; Mock, H.-P. 2016. A proteomic view of the cereal and vegetable crop response to salinity stress. In: Salekdeh, G.H. (Ed.), Agricultural Proteomics Volume 2: Environmental Stresses, Springer, 53-69.

Yakti, W.; Franken, P. 2016. Investigating the biocontrol potential of dark septate endophytes against plant fungal pathogens. IOBC-WPRS Bulletin 117, 56.

Zrenner, R.; Genzel, F.; Wibberg, D.; Verwaaijen, B.; Schlüter, A.; Grosch, R. 2016. Pathosystem Solanum tuberosum and Rhizoctonia solani AG3: impact on gene expression. Plant Biology Europe, EPSO/FESPB Congress Book of Abstracts, 738.

2017

Babin, D.; Sandmann, M.; Jacquiod, S.J.A.; Sørensen, S.J.; Geistlinger, J.; Grosch, R.; Smalla, K. 2017. Patient: Soil – The impact of long-term farming strategies on soil health. 14th Symposium on Bacterial Genetics and Ecology (BAGECO14), Book of Abstracts, 93-94.

Barkowski, H. J.; Schierstaedt, J.; Shrestha, A.; Grosch, R.; Schikora, A. 2017. Diversified microbiome bears the potential to protect crop plants against human pathogens. miCROPe 2017, Book of Abstracts, 59.

Bitterlich, M.; Gräfe, J.; Franken, P. 2017. Primary metabolism in arbuscular mycorrhizal symbiosis: carbon, nitrogen and sulphur. In: Martin, F. (Ed.), Molecular Mycorrhizal Symbiosis, Wiley, 217-238.

Cruz Barrera, F.M.; Jakobs-Schönwandt, D; Ruppel, S.; Becker, M.; Berger, B.; Junge, H.; Dietel, K.; Patel, A. 2017. Compatible solutes accumulation capacity of the endophytic bacteria Kosakonia radicincitans. Tropentag 2017: Future Agriculture: Social-ecological transitions and bio-cultural shifts, Book of Abstracts, 168.

De Rocchis, V.; Roitsch, T.; Franken, P. 2017. Carbohydrate metabolism and production of phytohormones in interactions of Serendipita indica and Serendipita herbamans with their plant partner. International Symposium on microbe-assisted crop production – opportunities, challenges & needs, Book of Abstracts, 134.

Djalali Farahani-Kofoet, R.; Grosch, R. 2017. Control of downy mildew in basil by reducing the relative humidity. Botanikertagung 2017 Plant Research in a Changing World, Book of Abstracts, 7128.

Ekandjo, L.K. 2017a. Investigating two nitrogenase isozymes of Kosakonia radicincitans DSM16656T. International Symposium on microbe-assisted crop production – opportunities, challenges & needs, Book of Abstracts, 115.

Ekandjo, L.K. 2017b. The role of the anfH and nifH genes of the plant growth-promoting bacterium Kosakonia radicincitans DSM16656T cultured under standard biological nitrogen fixation growth conditions. 20th International Congress on Nitrogen Fixation, Book of Abstracts, 75.

Fornefeld, E.; Schierstaedt, J.; Jechalke, S.; Grosch, R.; Smalla, K.; Schikora, A. 2017. Interaction between Salmonella and plants – potential hosts and vectors for human infection. In: Mares, M. (Ed.), Current Topics in Salmonella and Salmonellosis, Intech, 171-191.

Franken, P.; Bitterlich, M.; Andrade-Linares, D.R.; Kressner, S.; Kühn, C.; Ngwene, B.; Yakti, W. 2017. Tit for tat: Nutrient exchange in root-endophyte interactions. Sustain: endophytes for a growing world, Book of Abstracts, 10.

Gaber, D.; Berthelot, C.; Blaudez, D.; Kovács, G.M.; Franken, P. 2017a. Stress acclimatization and melanin production of Dark Septate Endophytes. 9th International Conference on Mycorrhiza, Book of Abstracts, 253.

Gaber, D.; Berthelot, C.; Blaudez, D.; Kovács, G.M.; Franken, P. 2017b. Stress acclimatization and melanin production of Dark Septate Endophytes. Sustain: endophytes for a growing world, Book of Abstracts, 60.

Gräfe, J.; Frühauf, C. 2017a. Gemüsebau. In: Bundesanstalt für Landwirtschaft und Ernährung (Ed.), Agrarmeteorologie, Bundesinformationszentrum Landwirtschaft, 98-107.

Gräfe, J.; Sradnick, A. 2017b. Monitoring and modelling of water and heat fluxes from asparagus fields. 14th International Asparagus Symposium Potsdam, Book of Abstracts, 34.

Grosch, R.; Babin, D.; Sandmann, M.; Sørensen, S.J.; Geistlinger, J.; Smalla, K. 2017. Long-term farming strategies affect soil and associated rhizosphere microbiome. 5th Asian PGPR International Conference for Sustainable Agriculture, Book of Abstracts, 67.

Heinze, M.; Schreiner, M.; Baldermann, S.; Hanschen, F.S.; Wiesner-Reinhold, M.; Neugart, S. 2017. Influence of different UV light spectra on the biosynthesis of secondary plant metabolites in different developmental stages of pak choi. 4th International Glucosinolate Conference, Glucosinolate Summit Proceedings, 96.

Jechalke, S.; Schierstaedt, J.; Smalla, K.; Grosch, R.; Schikora, A. 2017. BLE-Projekt plantinfect – Besiedlung von Kulturpflanzen durch Salmonella. Journal für Kulturpflanzen 69, 182-183.

Klopsch, R.; Witzel, K.; Börner, A.; Schreiner, M.; Hanschen, F.S. 2017. Genotypic variation of glucosinolates and their hydrolysis products in a germplasm collection of Brassica rapa turnips. 4th International Glucosinolate Conference, Glucosinolate Summit Proceedings, 84.

Nelkner, J.; Hassa, J.; Grosch, R.; Winkler, A.; Bunk, B.; Overmann, J.; Pühler, A.; Schlüter, A. 2017. Genome analyses of the effective biocontrol strain Pseudomonas brassicacearum 3Re2-7 in the context of other P. brassicacearum genomes. 7th European Conference on Prokaryotic and Fungal Genomics, Book of Abstracts, 80.

Risha, M.A.; Witzel, K.; Albers, P.; Schreiner, M.; Hanschen, F.S. 2017. Identification and characterization of Brassica oleracea specifier proteins in the enzymatic degradation of glucosinolates. 4th International Glucosinolate Conference, Glucosinolate Summit Proceedings, 64.

Ruppel, S.; Beutin, L.; Scherwinski, A.C.; Fayez, M.; Hegazi, N.A. 2017. Kulturpflanzen als Reservoir von humanpathogenen Mikroorganismen. Natürliches Vorkommen von potentiell humanpathogenen E. coli an Bockshornklee und Kräutern. Journal für Kulturpflanzen 69, 181.

Schierstaedt, J.; Grosch, R.; Jechalke, S.; Schikora, A.; Smalla, K. 2017a. Diversität der mikrobiellen Gemeinschaft in landwirtschaftlichen Böden beeinflusst die Persistenz von Salmonella. Journal für Kulturpflanzen 69, 183.

Schierstaedt, J.; Jechalke, S.; Fornefeld, E.; Grosch, R.; Smalla, K.; Schikora, A. 2017b. Persistence of Salmonella in agricultural soil. 5th Joint Conference of the Deutschen Gesellschaft für Hygiene und Mikrobiologie (DGHM) & Vereinigung für Allgemeine und Angewandte Mikrobiologie (VAAM) Microbiology and Infection, BioSpectrum Abstractbook Microbiology and Infection 2017, 149.

Schierstaedt, J.; Jechalke, S.; Schikora, A.; Smalla K.; Grosch, R. 2017c. Influence of the microbial diversity and fertilization on the survival of Salmonella enterica in agricultural soil. 14th Symposium on Bacterial Genetics and Ecology, Book of Abstracts, 98.

Sharma, S.; Ballhausen, M.B.; Ruppel, S.; Franken, P. 2017a. Decoding the interaction between root endophytic fungi and beneficial bacteria. 9th International Conference on Mycorrhiza. Book of Abstracts.

Sharma, S.; Ballhausen, M.B.; Ruppel, S.; Franken, P. 2017b. Tripartite interaction between Serendipita indica, mycophagous Collimonas fungivorans and the nitrogen fixing Kosakonia radicincitans. International symposium on microbe-assisted crop production – opportunities, challenges & needs, Book of Abstracts.

Sommermann, L.; Babin, B.; Sandmann, M.; Smalla, K.; Schellenberg, I.; Grosch, R.; Geistlinger, J. 2017. Effect of long-term farming strategies on soil microbiota and soil health. Geophysical Research Abstracts Vol. 19, EGU2017-15809.

Tchuisseu Tchakounté, G.V.; Berger, B.Patz, S.; Fankem, H.; Ruppel, S. 2017. Community structure and plant growth-promoting potential of cultivable bacteria isolated from Cameroon soil. Communicating Science-Connecting Worlds, Plants and People Conference, Book of Abstracts, 77.

Verwaaijen, B.; Wibberg, D.; Nelkner, J.; Gordin, M.; Rupp, O.; Winkler, A.; Bremges, A.; Blom, J.; Grosch, R.; Pühler, A.; Schlüter, A. 2017. The Lactuca sativa, L. cv. Tizian de-novo draft genome sequence and transcriptome during interaction with the pathogen Rhizoctonia solani. de.NBI symposium 2017, Book of Abstracts, 28.

Wollschläger, U.; Amelung, W.; Brüggemann, N.; Brunotte, J.; Gebbers, R.; Grosch, R.; Heinrich, U.; Helmig, K.; Kiese, R.; Leinweber, P.; Reinhold-Hurek, B.; Veldkamp, E.; Voger, H.-J.; Winkelmann, T. 2017. Soil as sustainable resource for the bioeconomy-BonaRes. Geophysical Research Abstracts Vol. 19, EGU2017-16569.

Yakti, W.; Kovács, G.M.; Franken, P. 2017. Differential interaction of dark septate endophytes and fungal pathogens in vitro and in planta. 9th International Conference on Mycorrhiza, Book of Abstracts, 254.

Zrenner, R.; Genzel, F.; Verwaaijen, B.; Wibberg, D.; Schlüter, A.; Grosch, R. 2017. Complex interaction of plants with the soil-borne pathogen Rhizoctonia solani as revealed by genome wide expression analyses. Botanikertagung 2017 Plant Research in a Changing World, Book of Abstracts, 7153.

2018

Abdelfadeel, M.R.; Sarhan, M.S.; Hamza, M.A.; Youssef, H.H.; Fayez, M.; Ruppel, S.; Hegazi, N.A. 2018. Clay beads as low-tech and low-cost method for long-term microbial preservation. The Plant Microbiome. Book of Abstracts, 21.

Babin, D.; Bziuk, N.; Yim, B.; Eltlbany, N.; Chowdhury, S.; Grosch, R.; Winkelmann, T.; Vetterlein, D.; Smalla, K. 2018a. The rhizosphere microbiome – key for plant health and growth. The Plant Microbiome, Book of Abstracts, 41.

Babin, D.; Chowdhury, S.; Sandmann, M.; Sommermann, L.; Fließbach, A.; Mäder, P.; Geistlinger, J.; Smalla, K.; Rothballer, M.; Grosch, R. 2018b. Influence of long-term organic or mineral fertilization practices on the rhizosphere microbiome and plant health evaluated under controlled growth-chamber conditions. BonaRes Conference, Book of Abstracts.

Becker, M.; Becker, Y.; Ruppel, S.; Patz, S. 2018a. To be or not to be a pathogen: Differentiate true virulence factors of bacteria from false positives. 3rd International Workshop on Interactions between crop plants and human pathogens, Book of Abstracts, 7.

Becker, M.; Patz, S.; Becker, Y.; Berger, B.; Ruppel, S. 2018b. Kosakonia radicincitans DSM 16656T has a significant impact on the tomato microbiome. The Plant Microbiome. Book of Abstracts, 28.

Berger, B.; Baldermann, S.; Ruppel, S. 2018. The plant growth-promoting bacteria Kosakonia radicincitans improves fruit yield and quality of Solanum lycopersicum. The Plant Microbiome. Book of Abstracts, 57.

Bergna, A.; Cernava, T.; Rändler, M.; Grosch, R.; Zachow, C.; Berg, G. 2018. The vertical transmission of the tomato plant microbiome is influenced by environmental conditions. 5th Theodor Escherich & 2nd AMICI Joint Symposium, Book of Abstracts.

Cernava, T.; Mülner, P.; Wagner, P.; Bergna, A.; Dietel, K.; Grosch, R.; Berg, G. 2018. Integration for microbiome-based approaches for biological control of sclerotia. 11th International Congress of Plant Pathology. Book of Abstracts.

Cruz-Barrera, M.; Jakobs-Schoenwandt, D.; Becker, M.; Patel, A.; Serrato, J.; Gomez, M.; Ruppel, S. 2018. Osoadaptation and hydroxyectoine accumulation enhance endophytism of encapsulated Kosakonia radicincitans in radish plants. The Plant Microbiome. Book of Abstracts, 58.

Daanaa, H.-S. A.; Abdou, M.; Hamza, M.A.; Sarhan, M.S.; Morsi, A.T.; Youssef, H.H.; Goda, H.A.; Abbas, M.T.; El-Tahan, M.; Fayez, M.; Ruppel, S.; Hegazi, N.A. 2018. Plant pellets: A novel strategy for quick preparation of plant-only-based culture media for cultivation and value-added biomass production of rhizobacteria. The Plant Microbiome, Book of Abstracts, 20.

Djalali Farahani-Kofoet, R.; Grosch, R. 2018a. Einfluss von Temperatur und Luftfeuchtigkeit auf die epidemische Ausbreitung des Falschen Mehltaus im Basilikumbestand. BHGL-Schriftenreihe 33, 15.

Djalali Farahani-Kofoet, R.; Witzel, K.; Gräfe, J.; Grosch, R.; Zrenner, R. 2018b. Einfluss von Fusarium-Arten auf das Wurzelsystem von Spargel. 61. Pflanzenschutztagung Hohenheim, Book of Abstracts, 445.

Djalali Farahani-Kofoet, R.; Witzel, K.; Graefe, J.; Grosch, R.; Zrenner, R. 2018c. Species-specific impact of Fusarium ssp. on Asparagus officinalis crown and root rot. 14th European Fusarium Seminar (EFS14), Book of Abstracts, 95.

Ekandjo, L.K.; Remus, R.; Becker, Y.; Witzel, K.; Patz, S.; Ruppel, S. 2018. Investigating Kosakonia radicincitans DSM16656T BNF activities in pure cultures and in inoculated vegetables. International conference on plant and molecular biology. Book of Abstracts.

El_Sawey, H.; Namer, R.A.; Sarhan, M.S.; Hamza, M.A.; Youssef, H.H.; El-Tahan, M.; Fayez, M.; Ruppel, S.; Hegazi, N.A. 2018. Plant syrups are appropriate substrates to prepare plant-only-based culture media to improve cultivability of endophytic plant microbiome. The Plant Microbiome, Book of Abstracts, 19.

Franken, P.; Bitterlich, M.; Gaber, D.; Shahriyaji, H.; Yakti, W. 2018. Functional diversity of root colonizing fungi. The Plant Microbiome, Book of Abstracts, 26.

Gaber, D. A.; Berthelot, C.; Blaudez, D.; Kovacs, G. M.; Franken, P. 2018a. Extent of compatibility between stress tolerance and melanin production in dark septate endophytes. Annual conference of the Association for General and Applied Microbiology, Book of Abstracts, 81.

Gaber, D.A.; Berthelot, C.; Blaudez, D.; Kovacs, G.M.; Franken, P. 2018b. Dark septate endophytes (DSEs) responses to abiotic tress and their role in alleviation of salt stress in tomato plant. The Plant Microbiome, Book of Abstracts, 70.

Grosch, R.; Babin, D.; Sommermann, L.; Geistlinger, J.; Windisch, S.; Neumann, G.; Chowdhury, S.P.; Sandmann, M.; Smalla, K. 2018a. Effect of long-term farming practices on the plant and its associated rhizosphere microbiome. 11th International Mycological Congress (IMC) 2018, Book of Abstracts, 161.

Grosch, R.; Dietel, K.; Chowdhury, S.P.; Junge, H.; Schreiter, S.; Berg, G.; Smalla, K. 2018b. From lab to the field: disease-suppressing effects of beneficial microbes toward soil-borne fungal pathogens. First International Congress of Biological Control (ICBC), Book of Abstracts, 85-86.

Grosch, R.; Genzel, F.; Franken, P. 2018c. Response of potato to the black scurf disease pathogen Rhizoctonia solani Kühn AG-3. 11th IMC 2018, Book of Abstracts, 389.

Grosch, R.; Sandmann, M.; Geistlinger, J.; Sommermann, L.; Smalla, K.; Babin, D.; Schlüter, A.; Nelkner, J.; Neumann, G.; Windisch, S.; Chowdhury, S.; Rothballer M. 2018d. Impact of long-term farming strategies on soil and associated rhizosphere microbiomes. BonaRes Conference, Book of Abstracts.

Grosch, R.; Verwaaijen, B.; Genzel, F.; Pühler, A.; Schlüter, A.; Zrenner, R. 2018e. Using dual RNA-seq analysis to decipher Rhizoctonia solani – host plant interaction. 11th International Congress of Plant Pathology. Book of Abstracts.

Gulati, S.; Bergna, A.; Rändler, M.; Cernava, T.; Ballhausen, M.B.; Berg, G.; Grosch, R.; Flemer, B. 2018a. Influence of biotic and abiotic stress on tomato endophytes. The Plant Microbiome, Book of Abstracts, 65.

Gulati, S.; Rändler, M.; Witzel, K.; Ballhausen, M.B.; Grosch, R.; Flemer, B. 2018b. Plant growth promoting potential of bacterial root endophytes of stressed plants. The Plant Microbiome, Book of Abstracts, 71.

Hamza, M.A.; Youssef, H.H.; Othman, A.A.; Eltahamy, A.A.; Elrehim, A.A.; Al-Afify, A.D.G.; Sarhan, M.S.; Patz, S.; El-Zanfaly, H.T.; Fayez, M.; Ruppel, S.; Hegazi, N.A. 2018. Monitoring the microbial quality and of field-grown fenugreek (Trigonella foenum graecum L.) including pathogenic E. coli under Egyptian farming conditions. The Plant Microbiome. Book of Abstracts, 44.

Hegazi, N.A.; Ruppel, S.; Sarhan, M.; Daanaa H.-S.; El-Ansary, E.; Darwish, A.; Khodary S.-E.; Nouh, A. 2018a. Omics technologies at the frontier of Plant microbiome research, Alexander von Humboldt Conference, Ismailia, Egypt, Book of Abstracts IV.

Hegazi, N.H.; Sarhan, M.S.; Youssef, H.H.; Hamza, M.A.; Fayez, M.; Ruppel, S. 2018b. Culturing the plant microbiome: The era of artificial media is about to end and the age of plant -only- based  culture media had dawned. The Plant Microbiome, Book of Abstracts, 15.

Jorzig, C.; Witzel, K.; Hanschen, F.S.; Müller, A.; Feller, C. 2018. Wachstumshemmung von Fusarium oxysporum und Rhizoctonia solani durch natives und synthetisches Allylisothiocyanat. BHGL-Schriftenreihe 33, 135.

Jozefowicz, A.M.; Matros, A.; Witzel, K.; Mock, H.-P. 2018. Mini-scale isolation and preparation of plasma membrane proteins from potato roots for LC/MS analysis. In: Mock, H.-P.; Matros, A.; Witzel, K. (Eds.) Plant Membrane Proteomics – Methods and Protocols. Humana Press, 195-204.

Lindemeyer, S.; Baldermann, S.; Witzel, K. 2018. Picturing natural variation in Arabidopsis root architecture in response to salinity by merging growth parameters and genomic information. 10th Meeting of the International Society of Root Research, Book of Abstracts, 156.

Mock, H.-P.; Finnie, C.; Witzel, K.; Svensson, B. 2018. Barley Proteomics. In: Stein, N.; Muehlbauer, G.J. (Eds.), The Barley Genome, Springer International Publishing, 345-361.

Mourad, E.F.; Sarhan, M.S.; Nemr, R.; Elsawy, H.; Youssef, H.H.; Hamza, M.A.; Fayez, M.; Ruppel, S.; Hegazi, N.A. 2018. Culturing with nutrient-free culture media: Echoing the plant inoculum effect into plant-only-based culture media. The Plant Microbiome, Book of Abstracts, 24.

Mülner, P.; Wagner, P.; Bergna, A.; Sarajlic, D.; Gstöttenmayr, B.; Dietel, K.; Grosch, R.; Cernava, T.; Berg, G. 2018. The microbiome of sclerotia of soil-borne fungal pathogens – a hot spot for interactions between potential biocontrol agents and phytopathogenic fungi. 5th Theodor Escherich & 2nd AMICI Joint Symposium, Book of Abstracts.

Nelkner, J.; Jaenicke, S.; Babin, D.; Smalla, K.; Grosch, R.; Pühler, A.; Sczyrba, A.; Schlüter, A. 2018a. Effect of soil cultivation and fertilization on the soil microbiome analyzed by metagenome sequencing, assembly and binning. BonaRes Conference, Book of Abstracts.

Nelkner, J.; Hassa, J.; Grosch, R.; Bunk, B.; Overmann, J.; Pühler, A.; Schlüter, A. 2018b. Comparative genome analyses of the biocontrol strain Pseudomonas brassicacearum 3Re2-7. BonaRes Conference, Book of Abstracts.

Nemr, R.A.; Elsawey, H.; Sarhan, M.S.; Youssef, H.H.; Hamza, M.A.; Ahmed, T.M.; Khalil, M.; Fayez, M.; El-Tahan, M.; El-Sahhar, K.F.; Patz, S.; Ruppel, S.; Witzel, K.; Hegazi, N.A. 2018. The plant leaf by itself is an excellent PAD-substrate for in situ cultivation of the plant microbiome.  The Plant Microbiome, Book of Abstracts, 18.

Patz, S.; Bağci, C.; Becker, M.; Berger, B.; Ruppel, S.; Huson, D.H. 2018a. In silico prediction of the  potential and the risk of microbial inoculants for sustainable crop production. International Symposium: The Plant Microbiome, Book of Abstracts, 11.

Patz, S.; Becker, M.; Ruppel, S.; Huson, D.H. 2018b. Tracing the dynamics of functional gene clusters. PhD day at Tübingen University, Algorithms in Bioinformatics, Book of Abstracts.

Püschel, D.; Bitterlich, M.; Jansa, J. 2018. Arbuscular mycorrhiza facilitated phosphorus acquisition by Medicago truncatula even under severe drought. Ecology of Soil Microorganisms 2018, Book of Abstracts.

Ruppel, S.; Patz, S.; Becker, M.; Berger, B.; Scherwinski, A.-C.; Hegazi, N. 2018a. The phyllosphere of Lepidium sativum – a habitat of human probiotic bacteria. 2nd Plant Microbiome Symposium, Proceedings.

Ruppel, S.; Patz, S.; Becker, M.; Berger, B.; Scherwinski, A.-C.; Hegazi, N. 2018b. The phyllosphere of Lepidium sativum– a habitat of human probiotic of pathogenic bacteria? 3rd International Workshop on Interactions between crop plants and human pathogens, Book of Abstracts.

Sandmann, M.; Graefe, J.; Grosch, R. 2018a. Die Verwendung von abgeleiteten Parametern aus Fluoreszenz-, Thermografie- und NDVI-Abbildungen zur Erkennung von biotisch gestresstem Kopfsalat. BHGL-Schriftenreihe 33, 64.

Sandmann, M.; Graefe, J.; Grosch, R. 2018b. The capability of features obtained via the non-contact methods of fluorescence, thermography and NDVI to detect biotic stressed lettuce. BonaRes Conference, Book of Abstracts.

Schierstadt, J.; Barkowski, H.J.; Jechalke, S.; Shrestha, A.; Smalla, K.; Grosch, R.; Schikora, A. 2018. Soil innate microbiota affects the persistence of human pathogens in soil. 5th Theodor Escherich & 2nd AMICI Joint Symposium, Book of Abstracts.

Sharma, S.; Compant, S.; Ballhausen, M.B.; Ruppel, S.; Franken, P. 2018a. Deciphering the interaction between Rhizoglomus irregulare, hyphae attached phosphate-solubilizing bacteria and their impact on Solanum lycopersicum. Annual Conference of the Association for General and Applied Microbiology, Book of Abstracts, 148.

Sharma, S.; Compant, S.; Ballhausen, M.B.; Ruppel, S.; Franken, P. 2018b. Effect of coinoculation of Rhizoglomus irregulare, and hyphae attached phosphate solubilizing bacteria on Solanum lycopersicum. The Plant Microbiome. Book of Abstracts, 29.

Tchuisseu Tchakounté, G.V.; Berger, B.; Patz, S.; Fankem, H.; Ruppel, S. 2018. Community structure and plant growth-promoting potential of cultivable bacteria isolated from Cameroon soil. The Plant Microbiome. Book of Abstracts, 45.

van Overbeek, L.; Grosch, R. 2018a. Human pathogens in plant production systems. First International Congress of Biological Control (ICBC), Book of Abstracts, 77-78.

van Overbeek, L.; Grosch, R. 2018b. Occurence of Human pathogens in plant production systems. International Association for Food Protection (IAFP) European Symposium on food safety, Book of Abstracts, 50.

Verwaaijen, B.; Wibberg, D.; Winkler, A.; Zrenner, R.; Bednarz, H.; Niehaus, K.; Grosch, R.; Pühler, A.; Schlüter, A. 2018. A deep sequencing dual RNAseq approach investigating the interaction between Rhizoctonia solani AG1-IB and a commercial Lactuca sativa cultivar (cv. Tizian). 11th IMC 2018, Book of Abstracts, 396-397.

Windisch, S.; Babin, D.; Chowdhury, S.; Neumann, G.; Sandmann, M. 2018. Implications of long-term agricultural soil management on plant signaling and rhizodeposition responses in Lactuca sativa. BonaRes Conference, Book of Abstracts.

Yakti, W.; Andrade-Linares, D.R.; Ngwene, B.; Bitterlich, M.; Kovács, G.M.; Franken, P. 2018a. Nutrition in root-fungi interactions. Annual Conference of the Association for General and Applied Microbiology, Book of Abstracts, 77.

Yakti, W.; Kovács, G.M.; Franken, P. 2018b. Differential interaction of dark septate endophytes and fungal pathogens in vitro and in planta. IOBC-WPRS Bulletin 133, 121.

Yakti, W.; Kovács, G.M.; Franken, P. 2018c. Interaction of dark septate endophytes with arbuscular mycorrhizal fungus Rhizoglomus irregulare. IOBC-WPRS Bulletin 133, 137-141.

 

Articles in peer-reviewed journals

2016

Ballhausen, M.B.; de Boer, W. 2016a. The sapro-rhizosphere: Carbon flow from saprotrophic fungi into fungus-feeding bacteria. Soil Biology and Biochemistry 102, 14-17.

Ballhausen, M.B.; Vandamme, P.; de Boer, W. 2016b. Trait differentiation within the fungus-feeding (mycophagous) bacterial genus Collimonas. PLoS ONE 11, e0157552.

Bitterlich, M.; Franken, P. 2016. Connecting polyphosphate translocation and hyphal water transport points to a key of mycorrhizal functioning. New Phytologist 211, 1147–1149.

Becker, M.; Becker, Y.; Green, S.B. 2016. The endophytic symbiont Epichloë festucae establishes an epiphyllous net on the surface of Lolium perenne leaves by development of an expressorium, an appressorium-like leaf exit structure. New Phytologist 211, 240-254.

Cosme, M.; Lu, J.; Erb, M.; Stout, M.; Franken, P.; Wurst, S. 2016a. A fungal endophyte helps plants to tolerate root herbivory through changes in gibberellin and jasmonate signaling. New Phytologist 211, 1065-1076.

Cosme, M.; Ramireddy, E.; Franken, P.; Schmülling, T.; Wurst, S. 2016b. Shoot- and root-borne cytokinin influences arbuscular mycorrhizal symbiosis. Mycorrhiza 26, 709-720.

Geilfus, C.M.; Hasler, K.; Witzel, K.; Gerendás, J.; Mühling, K.H. 2016. Interactive effects of genotype and N/S-supply on glucosinolates and glucosinolate breakdown products in Chinese cabbage (Brassica rapa L. ssp. pekinensis). Journal of Applied Botany and Food Quality 89, 279-286.

Müller, T.; Behrendt, U.; Ruppel, S.; Von der Waydbrink, G.; Müller, M.E.H. 2016. Fluorescent Pseudomonads in the phyllosphere of wheat: Potential antagonists against fungal phytopathogens. Current Microbiology 72, 383-389.

Neugart, S.; Krumbein, A.; Zrenner, R. 2016. Influence of light and temperature on gene expression leading to accumulation of specific flavonol glycosides and hydroxycinnamic acid derivatives in kale (Brassica oleracea var. sabellica). Frontiers in Plant Science 7, 326.

Ngwene, B.; Boukail, S.; Söllner, L.; Franken, P.; Andrade-Linares, D.R. 2016. Phosphate utilization by the fungal root endophyte Piriformospora indica. Plant and Soil 405, 231–241.

Rouphael, Y.; Rea, E.; Cardarelli, M.; Bitterlich, M.; Schwarz, D.; Colla, G. 2016. Can adverse effects of acidity and aluminum toxicity be alleviated by appropriate rootstock selection in cucumber? Frontiers in Plant Science 7, 1283.

Sarhan, M.S.; Mourad, E.F.; Hamza, M.A.; Youssef, H.H.; Scherwinski, A.-C.; El-Tahan, M.; Fayez, M., Ruppel, S.; Hegazi, N.A. 2016. Plant powder teabags: a novel and practical approach to resolve culturability and diversity of rhizobacteria. Physiologia Plantarum 157, 403-413.

Szymańska, S.; Płociniczak, T.; Piotrowska-Seget, Z.; Złoch, M.; Ruppel, S.; Hrynkiewicz, K. 2016. Metabolic potential and community structure of endophytic and rhizosphere bacteria associated with the roots of the halophyte Aster tripolium L. Microbiological Research 182, 68–79.

Youssef, H.H.; Hamza, M.A.; Fayez, M.; Mourad, E.F.; Saleh, M.Y.; Sharhan, M.S.; Suker, R.M.; Eltahlawy, A.A.; Nemr, R.A.; El-Tahan, M.; Ruppel, S.; Hegazi, N.A. 2016. Plant-based culture media: Efficiently support culturing rhizobacteria and correctly mirror their in-situ diversity. Journal of Advanced Research 7, 305-316.

2017

Antweiler, K.; Schreiter, S.; Keilwagen, J.; Baldrian, P.; Kropf, S.; Smalla, S.; Grosch, R.; Heuer, H. 2017. Statistical test for tolerability of effects of an antifungal biocontrol strain on fungal communities in three arable soils. Microbial Biotechnology 10, 434-449.

Berg, G.; Köberl, M.; Rybakova, D.; Müller, H.; Grosch, R.; Smalla, K. 2017. Plant microbial diversity is suggested as the key to future biocontrol and health trends. FEMS Microbiology Ecology 93, fix050.

Berger, B.; Baldermann, S.; Ruppel, S. 2017. The plant growth-promoting bacteria Kosakonia radicincitans improves fruit yield and quality of Solanum lycopersicum. Journal of the Science of Food and Agriculture 97, 4865-4871.

Buhtz, A.; Hohe, A.; Schwarz, D.; Grosch, R. 2017. Effects of Verticillium dahliae on tomato root morphology considering plant growth response and defence. Plant Pathology 66, 667-676.

Edelstein, M.; Cohen, R.; Elkabetz, M.; Pivonia, S.; Grosch, R.; Forster, P.; Schwarz, D. 2017. Performance of interspecific Cucurbita rootstocks compared to their parental lines. Scientia Horticulturae 216, 45-50.

Faust, S.; Heinze, S.; Ngosong, C.; Sradnick, A.; Oltmanns, M.; Raupp, J.; Geisseler, D.; Joergensen, R.G. 2017. Effect of biodynamic soil amendments on microbial communities in comparison with inorganic fertilization. Applied Soil Ecology 114, 82-89.

Fornefeld, E.; Schierstaedt, J.; Jechalke, S.; Grosch R.; Schikora, A.; Smalla, K. 2017. Persistence of Salmonella typhimurium LT2 in soil enhanced after growth in lettuce medium. Frontiers in Microbiology 8, 757.

Graefe, J. 2017. An operational forecast model for soil temperature in plastic-covered asparagus production systems. Acta Horticulturae 1154, 121-128.

Green, K.A.; Becker, Y.; Tanaka, A.; Takemoto, D.; Fitzsimons, H.L.; Seiler, S.; Lalucque, H.; Silar, P.; Scott, B. 2017. SymB and SymC, two membrane associated proteins, are required for Epichloë festucae hyphal cell–cell fusion and maintenance of a mutualistic interaction with Lolium perenne. Molecular Microbiology 103, 657-667.

Hegazi, N.A.; Sarhan, M.S.; Fayez, M.; Patz, S.; Murphy, B.R.; Ruppel, S. 2017. Plant-fed versus chemicals-fed rhizobacteria of Lucerne: Plant-only teabags culture media not only increase culturability of rhizobacteria but also recover a previously uncultured Lysobacter sp., Novosphingobium sp. and Pedobacter sp. PLoS ONE 12, e0180424.

Klopsch, R.; Witzel, K.; Börner, A.; Schreiner, M.; Hanschen, F.S. 2017. Metabolic profiling of glucosinolates and their hydrolysis products in a germplasm collection of Brassica rapa turnips. Food Research International 100, 392-403.

Kyriacou, M.C.; Rouphael, Y.; Colla, G.; Zrenner, R.; Schwarz, D. 2017. Vegetable grafting: The implications of a growing agronomic imperative for vegetable fruit quality and nutritive value. Frontiers in Plant Science 8, 741.

Lehnebach, C.A.; Winkworth, R.C.; Becker, M.; Lockhart, P.J.; Hennion, F. 2017. Around the pole: evolution of sub-Antarctic Ranunculus. Journal of Biogeography 44, 875-886.

Ntatsi, G.; Savvas, D.; Papasotiropoulos, V.; Katsileros, A.; Zrenner, R.; Hincha, D.K.; Zuther, E.; Schwarz, D. 2017. Rootstock sub-optimal temperature tolerance determines transcriptomic responses after long-term root cooling in rootstocks and scions of grafted tomato plants. Frontiers in Plant Science 8, 911.

Saleh, M.Y.; Sarhan, M.S.; Mourad, E.F.; Hamza, M.A.; Abbas, M.T.; Othman, A.A.; Youssef, H.H.; Morsi, A.T.; Youssef G.H.; El-Tahan, M.; Amer, W.A.; Fayez, M.; Ruppel, S.; Hegazi, N.A. 2017. A novel plant-based-sea water culture media for in vitro cultivation and in situ recovery of the halophyte microbiome. Journal of Advanced Research 8, 577-590.

Verwaaijen, B.; Wibberg, D.; Kröber, M.; Winkler, A.; Zrenner, R.; Bednarz, H.; Niehaus, K.; Grosch, R.; Pühler, A.; Schlüter, A. 2017. The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.). PLoS ONE 12, e0177278.

Wibberg, D.; Genzel, F.; Verwaaijen, B.; Blom, J.; Rupp, O.; Goesmann, A.; Zrenner, R.; Grosch, R.; Pühler, A.; Schlüter, A. 2017. Draft genome sequence of the potato pathogen Rhizoctonia solani AG3-PT isolate Ben3. Archiv Microbiology 199, 1065-1068.

Windisch S.; Bott S., Ohler M.A.; Mock H.-P.; Lippmann R.; Grosch R.; Smalla K.; Neumann G. 2017. Rhizoctonia solani and bacterial inoculants stimulate root exudation of antifungal compounds in lettuce in a soil-type specific manner. Agronomy 7, 44.

Witzel, K.; Buhtz, A.; Grosch, R. 2017a. Temporal impact of the vascular wilt pathogen Verticillium dahlia on tomato root proteome. Journal of Proteomics 169, 215-224.

Witzel, K.; Strehmel, N.; Baldermann, S.; Neugart, S.; Becker, Y.; Becker, M.; Scheel, D.; Grosch, R.; Schreiner, M.; Ruppel, S. 2017b. Arabidopsis thaliana root and root exudate metabolism is altered by the growth-promoting bacterium Kosakonia radicincitans DSM 16656T. Plant and Soil 419, 557-573.

Witzel, K.; Üstün, S.; Schreiner, M.; Grosch, R.; Börnke, F.; Ruppel, S. 2017c. A proteomic approach suggests unbalanced proteasome functioning induced by the growth-promoting bacterium Kosakonia radicincitans in Arabidopsis. Frontiers in Plant Science 8, 661.

Xu, D.; Hanschen, F.S.; Witzel, K.; Nintemann, S.J.; Nour-Eldin, H.H.; Schreiner, M.; Halkier, B.A. 2017. Rhizosecretion of stele-synthesized glucosinolates and their catabolites requires GTR-mediated import in Arabidopsis. Journal of Experimental Botany 68, 3205-3214.

2018

Becker, Y.; Green, K.; Scott, B.; Becker, M. 2018a. Artificial inoculation of Epichloë festucae into Lolium perenne, and visualisation of endophytic and epiphyllous fungal growth. Bio-protocol 8, e2990.

Becker, M.; Patz, S.; Becker, Y.; Berger, B.; Drungowski, M.; Bunk, B.; Overmann, J.; Spröer, C.; Reetz, J.; Tchuisseu Tchakounté, G.V.; Ruppel, S. 2018b. Comparative genomics reveal a flagellar system, a type VI secretion system and plant growth-promoting gene clusters unique to the endophytic bacterium Kosakonia radicincitans. Frontiers in Microbiology 9, 1997.

Bedini, A.; Mercy, L.; Schneider, C.; Franken, P.; Lucic-Mercy, E. 2018. Unraveling the initial plant hormone signaling, metabolic mechanisms and plant defense triggering the endomycorrhizal symbiosis behavior. Frontiers in Plant Sciences 9, 1800.

Berger, B.; Patz, S.; Ruppel, S.; Dietel, K.; Faetke, S.; Junge, H.; Becker, M. 2018. Successful formulation and application of plant growth-promoting Kosakonia radicincitans in maize cultivation. BioMed Research International, 6439481.

Bitterlich, M.; Franken, P.; Graefe J. 2018a. Arbuscular mycorrhiza improves substrate hydraulic conductivity in the plant available moisture range under root growth exclusion. Frontiers in Plant Science 9, 301.

Bitterlich, M.; Rouphael, Y.; Graefe, J.; Franken, P. 2018b. Arbuscular mycorrhizas: A promising component of plant production systems provided favorable conditions for their growth. Frontiers in Plant Science 9, 1329.

Bitterlich, M.; Sandmann, M.; Graefe J. 2018c. Arbuscular mycorrhiza alleviates restrictions to substrate water flow and delays transpiration limitation to stronger drought in tomato. Frontiers in Plant Science 9, 154.

Brock, A.K.; Berger, B.; Schreiner, M.; Ruppel, S.; Mewis, I. 2018. Plant growth-promoting bacteria Kosakonia radicincitans mediate anti-herbivore defense in Arabidopsis thaliana. Planta, 248, 1383-1392.

Bui, V.C.; Franken, P. 2018. Acclimatisation of Rhizophagus irregularis enhances Zn tolerance of the fungus and the mycorrhizal plant partner. Frontiers in Microbiology 9, 3156.

Deveau, A.; Bonito, G.; Uehling, J.; Paoletti, M.; Becker, M.; Bindschedler, S.; Hacquard, S.; Hervé, V.; Labbé, J.; Lastovetsky, O.; Mieszkin, S.; Millet, L.; Vajna, B.; Junier, P.; Bonfante, P.; Krom, B.P.; Olsson, S.; van Elsas, J.D.; Wick, L.Y. 2018. Bacterial – Fungal Interactions: ecology, mechanisms and challenges. FEMS Microbioloy Reviews 42, 335-352.

#Djalali Farahani-Kofoet, R.; Brändle, F.; Grosch, R. Molecular characterisation of downy mildew caused by Perofascia lepidii on garden cress and conditions favouring disease development. Journal of Plant Diseases and Protection.

Dölle, S.; Welter, S.; Ruppel, E.; Lehmann, K.; Schwarz, D.; Jensen-Jarolim, E.; Zieglmayer, P.; Franken, P.; Worm, M. 2018. Clinical reactivity of celery cultivars in allergic patients: role of Api g 1. Clinical & Experimental Allergy 48, 424-432.

Ekandjo, L.K.; Ruppel, S.; Remus, R.; Witzel, K.; Patz, S.; Becker, Y. 2018. Site-directed mutagenesis to deactivate two nitrogenase isozymes of Kosakonia radicincitans DSM16656T. Canadian Journal of Microbiology 64, 97-106.

Frede, K.; Schreiner, M.; Zrenner, R.; Graefe, J.; Baldermann, S. 2018. Diurnal changes of the carotenoid biosynthesis under different light qualities in pak choi (Brassica rapa ssp. chinensis). Photochemical and Photobiological Sciene 17, 1289–1300.

Genzel, F.; Franken, P.; Witzel, K.; Grosch, R. 2018. Systemic induction of salicylic acid-related plant defences in potato in response to Rhizoctonia solani AG3PT. Plant Pathology 67, 337-348.

Graefe, J.; Sradnick, A. 2018. Monitoring and modelling of water and heat fluxes from asparagus fields. Acta Horticulturae1223, 117-126.

Hanschen, F.S.; Pfitzmann, M.; Witzel, K.; Stützel, H.; Schreiner, M.; Zrenner, R. 2018. Differences in the enzymatic hydrolysis of glucosinolates increase the defense metabolite diversity in 19 Arabidopsis thaliana accessions. Plant Physiology and Biochemistry 124, 126-135.

Heinze, M.; Hanschen, F.S.; Wiesner-Reinhold, M.; Baldermann, S.; Graefe, J.; Schreiner, M.; Neugart, S. 2018. Effect of developmental stage and reduced UVB and low UV conditions on secondary plant metabolite profiles in pak choi (Brassica rapa spp. chinensis). Journal of Agricultural and Food Chemistry 66, 1678-1692.

Klopsch, R.; Witzel, K.; Artemyeva, A.; Ruppel, S.; Hanschen, F. 2018. Genotypic variation of glucosinolates and their breakdown products in leaves of Brassica rapa. Journal of Agricultural and Environmental Chemistry 66, 5481-5490.

#Liu, X.; Galli, M.; Camehl, I.; Gallavotti, A. RAMOSA1 Enhancer LOCUS2-mediated transcriptional repression regulates vegetative and reproductive architecture. Plant Physiology.

Mourad, E.F.; Sarhan, M.S.; Daanaa, H-S.A.; Abdou, M.; Morsi A.T.; Abdelfadeel, M.R.; Elsawey, R.; El-Tahan, M.; Hamza, M.A.; Abbas, M.; Youssef, H.H.; Abdelhadi, A.A.; Amer W.M.; Fayez, M.; Ruppel, S.; Hegazi, N. 2018. Plant materials are sustainable substrates supporting new technologies of plant-only-based culture media for in vitro culturing of the plant microbiota. Microbes and Environments 33, 40-49.

Müller, T.; Ruppel, S.; Behrendt, U.; Lentzsch, P.; Müller, M.E.H 2018. Antagonistic potential of fluorescent pseudomonads colonizing wheat heads against mycotoxin producing alternaria and fusaria. Frontiers in Microbiology 9, 2124.

Sabra, M.; Amal, A.-N.; Franken, P.; Perreca, E.; Wright, L.P.; Camehl, I. 2018. Beneficial root endophytic fungi increase growth and quality parameters of sweet basil in heavy metal contaminated soil. Frontiers in Plant Science 9, 1726.

Sandmann, M., Grosch, R.; Gräfe, J. 2018. The use of features from fluorescence, thermography and NDVI imaging to detect biotic stress in lettuce. Plant Disease 102, 1101-1107.

Sarhan, M.; Patz, S.; Hamza, M.; Youssef, H.; Mourad, E.; Fayez, M.; Murphy, B.; Ruppel, S.; Hegazi, N. 2018. G3 PhyloChip analysis confirms the promise of plant-based culture media for unlocking the composition and diversity of the maize root microbiome and for recovering unculturable candidate dicisions/phyla. Microbes and Environments 33, 317-325.

Schierstaedt, J.; Bziuk, N.; Kuzmanović, N.; Blau, K.; Smalla, K.; Jechalke, S. 2018. Role of Plasmids in Plant-Bacteria Interactions. Current Issues in Molecular Biology 30, 17-38.

Schreiter, S.; Babin, D.; Smalla, K.; Grosch, R. 2018. Rhizosphere competence and biocontrol effect of Pseudomonas sp. RU47 independent from plant species and soil type at the field scale. Frontiers in Microbiology 9, 97.

Schröter, D.; Baldermann, S.; Schreiner, M.; Witzel, K.; Maul, R.; Rohn, S.; Neugart, S. 2018. Natural diversity of hydroxycinnamic acid derivatives, flavonoid glycosides, carotenoids and chlorophylls in leaves of six different amaranth species. Food Chemistry 267, 376-386.

Tchuisseu Tchakounté, G.V.; Berger, B.; Patz, S.; Fankem, H.; Ruppel, S. 2018a. Community structure and plant growth-promoting potential of cultirable bacteria isolated from Cameroon soil. Microbiological Research 214, 47-59.

Tchuisseu Tchakounté G.V.; Berger, B.; Patz, S.; Fankem, H.; Ruppel, S. 2018b. Data on molecular identification, phylogeny and in vitro characterization of bacteria isolated from maize rhizosphere in Cameroon. Data in Brief 19, 1410-1417.

Verwaaijen, B.; Wibberg, D.; Nelkner, J.; Gordin, M.; Rupp, O.;Winkler, A.; Bremges, A.; Blom, J.; Grosch, R.; Pühler, A.; Schlüter, A. 2018. Assembly of the Lactuca sativa, L. cv. Tizian draft genome sequence reveals differences within major resistance complex 1 as compared to the cv. Salinas reference genome. Journal of Biotechnology 267, 12-18.

Wang, M.; Schäfer, M.; Li, D.; Halitschke, R.; Dong, C.; McGale, E.; Paetz, C.; Song, Y.; Li, S.; Dong, J.; Heiling, S.; Groten, K.; Franken, P.; Bitterlich, M.; Harrison, M.; Paszkowski, U.; Baldwin, I. 2018. Blumenols as shoot markers for root symbiosis with arbuscular mycorrhizal fungi. eLife 7, e37093.

Witzel, K.; Matros, A.; Møller, A.L.B.; Ramireddy, E.; Finnie, C.; Peukert, M.; Rutten, T.; Herzog, A.; Kunze, G.; Melzer, M.; Kaspar-Schoenefeld, S.; Schmülling, T.; Svensson, B.; Mock, H.-P. 2018. Plasma membrane proteome analysis identifies a role of barley membrane steroid binding protein in root architecture response to salinity. Plant, Cell & Environment 41, 1311-1330.

2019

Babin, D., Deubel, A.; Jacquiod, S.J.; Sørensen, S.J.; Geistlinger, J.; Grosch, R.; Smalla, K. 2019. Impact of long-term agricultural management practices on soil prokaryotic communities. Soil Biol. Biochem. 129:17-28.

Bergna, A.; Cernava, T.; Rändler, M.; Grosch, R.; Zachow, Ch.; Berg, G. 2018. Tomato seeds preferably transmit plant beneficial endophytes. Phytobiomes Journal 2:183-193.

Bitterlich, M.; Franken, P.; Graefe, J. 2019. Atmospheric drought and low light impede mycorrhizal effects on leaf photosynthesis – a glasshouse study on tomato under naturally fluctuating environmental conditions. Mycorrhiza 29, 13-28.

Cruz Barrera, F.M., Jakobs-Schoenwandt, B., Gómeza, M.I., Becker, M., Patel, A., Ruppel, S. 2019: Salt stress and hydroxyectoine enhance phosphate solubilisation and plant colonisation capability of Kosakonia radicincitans. Journal of Advanced Research

Druege, U.; Hilo, A.; Pérez-Pérez, J. M.; Klopotek, Y.; Acosta, M.; Shahinnia, F.; Zerche, S.; Franken, P.; Hajirezaei, M. R. 2019. Molecular and physiological control of adventitious rooting in cuttings: phytohormone action meets resource allocation. Annals of Botany, mcy234.

Graefe, J.; Prüfert, U.; Bitterlich, M. 2019. Extension of the cylindrical root model for water uptake to non-regular root distributions. Vadose Zone Journal 18:180127.

Hegazi, N.A.; Hartmann, A.; Ruppel, S. 2019: Editorial. The plant microbiome: Exploration of plant-microbe interactions for improving agricultural productivity. Journal of Advanced Research

Hrynkiewicz, K.; Patz, S.; Ruppel, S. 2019: Salicornia europaea L. as an underutilized saline-tolerant plant inhabited by endophytic diazotrophs. Journal of Advanced Research.

Jechalke S., Schierstaedt J., Becker M., Flemer B., Grosch R., Smalla K., Schikora A. 2019. Salmonella establishment in agricultural soil and colonization of crop plants depend on soil type and plant species. Front. Microbiol. 10:967.

Liu, X.; Galli, M.; Camehl, I.; Gallavotti, A. 2019. RAMOSA1 Enhancer LOCUS2-mediated transcriptional repression regulates vegetative and reproductive architecture. Plant Physiology 179, 348-363.

Mülner P., Bergna A., Wagner P., Sarajilic D., Gstöttenmayr B., Dietel K., Grosch R., Cernava T., Berg G. 2019. Microbiota associated with sclerotia of biocontrol agents producing bio-active volatiles. Phytobiomes Journal

Patz, S.; Becker, Y.; Richert-Pöggeler K.R.; Berger, B.; Ruppel, S.; Huson, H.D.; Becker, M. 2019: Phage tail-like particles are versatile bacterial nanomachines – A mini-review. Journal of Advanced Research

Sarhan, M.S.; Hamza, M.A.; Youssef, H.H.; Patz, S.; Becker, M.; ElSawey, H.; Nemr, R.; Daanaa, H-S. A.; Mourad, E.F.; Morsi, A.T.; Abdelfadeel, M.R.; Abbas, M.T.; Fayez, M.; Ruppel, S.; Hegazi, N.A. 2019: Culturomics of the plant prokaryotic microbiome and the dawn of plant-based culture media – A review. Journal of Advanced Research

Schierstaedt, J.; Bziuk, N.; Kuzmanović, N.; Blau, K.; Smalla, K.; Jechalke, S. 2019. Role of plasmids in plant-bacteria interactions. Current Issues in Molecular Biology 30: 17-38.

Verwaaijen, B.; Wibberg, D.; Winkler, A.; Zrenner, R.; Bednarz, H.; Niehaus, K.; Grosch, R.; Pühler, A.; Schlüter, A. 2019. A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani. Scientific Reports 9, 7221.

Yakti, W.; Kovács, G. M.; Vági, P.; Franken, P. 2019. Impact of dark septate endophytes on tomato growth and nutrient uptake, Plant Ecology & Diversity

 

Work and discussion paper

2018

Albers, P.; Üstün, S.; Witzel, K.; Kraner, M.; Börnke, F. 2018. A remorin from Nicotiana benthamiana interacts with the Pseudomonas type-III effector protein HopZ1a and is phosphorylated by the immune-related kinase PBS1. bioRxiv 409235.

 

Editorship of edited volumes

2017

Brueckner, B.; Feller, C.; Graefe, J.; Mueller, A. (Eds.) 2017. 14th International Asparagus Symposium Potsdam. Gartenbauliche Berichte Heft 7, IGZ, pp 80, ISSN 1437-3394.

2018

Mock, H.-P.; Matros, A.; Witzel, K. (Eds.) 2018. Plant Membrane Proteomics – Methods and Protocols. Humana Press, pp 280, ISSN 1064-3745.

Brückner, B.; Feller, C.; Graefe, J. 2018. XIV International Asparagus Symposium. ISHS Acta Hortic. 1223.

# accepted in 2018 for publication in 2019

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